[MOBY-guts] biomoby commit

[Paul Gordon]

gordonp
Thu Feb  8 11:59:58 EST 2007
Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data
In directory dev.open-bio.org:/tmp/cvs-serv27169/main/org/biomoby/shared/data

Modified Files:
	MobyDataJob.java MobyDataObjectVector.java 
	MobyDataServiceAssocInstance.java package.html 
Log Message:
Documentation updates
moby-live/Java/src/main/org/biomoby/shared/data MobyDataJob.java,1.2,1.3 MobyDataObjectVector.java,1.1,1.2 MobyDataServiceAssocInstance.java,1.2,1.3 package.html,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data/MobyDataJob.java,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data/MobyDataJob.java	2006/12/11 19:00:07	1.2
+++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data/MobyDataJob.java	2007/02/08 16:59:58	1.3
@@ -1,3 +1,9 @@
+package org.biomoby.shared.data;
+
+import java.util.HashMap;
+import java.util.Iterator;
+import java.util.Vector;
+
 /**
  * Groups together the primary and secondary data corresponding to a MOBY XML "mobyData" block, i.e.
  * a request for, or response from, a service.  One or more MobyDataJobs can be put in one MobyContentInstance
@@ -6,12 +12,6 @@
  * would with any Map.
  */
 
-package org.biomoby.shared.data;
-
-import java.util.HashMap;
-import java.util.Iterator;
-import java.util.Vector;
-
 public class MobyDataJob extends HashMap<String, MobyDataInstance>{
 
     protected String id = "no id specified";

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data/MobyDataObjectVector.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data/MobyDataObjectVector.java	2006/07/07 04:12:40	1.1
+++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data/MobyDataObjectVector.java	2007/02/08 16:59:58	1.2
@@ -1,9 +1,3 @@
-/**
- * This class is primarily intended for use by MobyDataComposite to represent
- * Object members in the HAS (i-to-many) relationship. Not all MobyDataObject
- * behaviours are well defined for this object, but should rather be called on its members.
- * If you are looking to represent a MOBY XML Collection please see MobyDataObjectSet.
- */
 
 package org.biomoby.shared.data;
 
@@ -16,6 +10,12 @@
 import org.biomoby.shared.MobyPrefixResolver;
 import org.biomoby.shared.MobyRelationship;
 
+/**
+ * This class is primarily intended for use by MobyDataComposite to represent
+ * Object members in the HAS (1-to-many) relationship. Not all MobyDataObject
+ * behaviours are well defined for this object, but should rather be called on its members.
+ * If you are looking to represent a MOBY XML Collection please see MobyDataObjectSet.
+ */
 
 public class MobyDataObjectVector extends MobyDataObject implements List<MobyDataObject>{
     private Vector<MobyDataObject> members;
@@ -32,7 +32,7 @@
 	members = new Vector<MobyDataObject>(initialCapacity);
     }
 
-    // TODO: deal with cloning, CRIB and RIB setting
+    // TODO: deal with cloning, CRIB and PIB setting
 
     public String toXML(){
 	StringBuffer concatXML = new StringBuffer();

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data/MobyDataServiceAssocInstance.java,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data/MobyDataServiceAssocInstance.java	2006/07/07 04:12:40	1.2
+++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data/MobyDataServiceAssocInstance.java	2007/02/08 16:59:58	1.3
@@ -1,3 +1,7 @@
+package org.biomoby.shared.data;
+
+import org.biomoby.shared.MobyService;
+
 /**
  * This interface defines a data instance that has already had remote
  * MOBY services associated with it, probably through a call to MOBY central.
@@ -5,10 +9,6 @@
  * take it as valid input.
  */
 
-package org.biomoby.shared.data;
-
-import org.biomoby.shared.MobyService;
-
 public interface MobyDataServiceAssocInstance extends MobyDataInstance {
 
     public MobyService[] getServices();

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data/package.html,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data/package.html	2006/07/07 04:12:40	1.1
+++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data/package.html	2007/02/08 16:59:58	1.2
@@ -6,6 +6,6 @@
 
 The package <tt>org.biomoby.shared.data</tt> allows you to easily 
 build MOBY data instances for sending to services, or querying
-the registry.   Please see the <a href=http://www.visualgenomics.ca/gordonp/mobydocs/DataPackageInAnger.html">In Anger</a>
+the registry.   Please see the <a href="http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Java/docs/DataPackageInAnger.html">In Anger</a>
 document for more information.<p>
 </body> </html>