[MOBY-dev] Help with the featureClient

[Lucas Amorim]

Yes, I think I'll have some trouble setting it up yet. Thank you!


Lucas Amorim

Instituto de Computação
Universidade Federal de Alagoas
Curriculum Lattes: http://lattes.cnpq.br/2470781099632240

Linux User #425305



On 25 October 2010 10:22, Edward Kawas <edward.kawas at gmail.com> wrote:
> Hi Lucas,
>
> Look at the following page:
>
> http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Java/docs/FeatureClient.ht
> ml
>
> Unfortunately, like Martin said, there are many dependencies required for
> most of the biomoby functionality and so you cannot simply run most clients
> using java -jar.
>
> Eddie
>
> -----Original Message-----
> From: moby-dev-bounces at lists.open-bio.org
> [mailto:moby-dev-bounces at lists.open-bio.org] On Behalf Of Lucas Amorim
> Sent: Saturday, October 23, 2010 5:32 PM
> To: moby-dev at lists.open-bio.org
> Subject: [MOBY-dev] Help with the featureClient
>
> Hello,
>
> I don't know if this is the appropriate mailing list, if not, please point
> me to the right one. Or just answer me :D I am trying to use jmoby for a
> datamining project I am in, but, before diving into the real task, I would
> like to run the FeatureClient example they have, but when I try to run it
> like this:  java -jar FeatureClient.jar SimpleSingleCall, i get a lot of
> java related errors I can't understand (C++ programmer), such as:
>
> neutron:featureClient lucas$ java -jar FeatureClient.jar SimpleSingleCall
> Exception in thread "main" java.lang.NoClassDefFoundError:
> org/apache/axis/AxisFault
>        at
> de.mpg.mpiz_koeln.pcb.featureClient.FeatureClient.<init>(FeatureClient.java:
> 93)
>        at
> de.mpg.mpiz_koeln.pcb.featureClient.test.SimpleSingleCall.main(SimpleSingleC
> all.java:18)
>        at
> de.mpg.mpiz_koeln.pcb.featureClient.test.FeatureClientFactory.main(FeatureCl
> ientFactory.java:40)
> Caused by: java.lang.ClassNotFoundException: org.apache.axis.AxisFault
>        at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
>        at java.security.AccessController.doPrivileged(Native Method)
>        at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
>        at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
>        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
>        at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
>        ... 3 more
> neutron:featureClient lucas$
>
> Can you please help me? I have tried it with different sun java versions and
> also on mac (above) and on linux.
>
> Thanks in advance!
>
> Lucas Amorim
>
> Instituto de Computação
> Universidade Federal de Alagoas
> Curriculum Lattes: http://lattes.cnpq.br/2470781099632240
>
> Linux User #425305
>
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