[MOBY-dev] Problems with http://biomoby.org/RESOURCES/MOBY-S/Objects

[Edward Kawas]

Hi Andreas,

I cannot reproduce this error. I have tried running the 'main' for each of
the classes in the package org.biomoby.shared.extended and each of them
worked ...

Eddie

-----Original Message-----
From: moby-dev-bounces at lists.open-bio.org
[mailto:moby-dev-bounces at lists.open-bio.org] On Behalf Of Andreas Groscurth
Sent: November-26-07 6:05 AM
To: Core developer announcements
Subject: [MOBY-dev] Problems with
http://biomoby.org/RESOURCES/MOBY-S/Objects

Hi,

I'm using CentralCachedCallsImpl to send calls to the Central.

The first time i'm calling it it collects the service types from the url 
http://biomoby.org/RESOURCES/MOBY-S/Objects

For the last months this worked fine, but as I tried to today i receive
error 
by error:

Cannot parse MOBY Service Type Ontology:
com.hp.hpl.jena.shared.JenaException: 
rethrew: ARP interrupted
15:00:48,230 ERROR [STDERR] java.io.InterruptedIOException: ARP interrupted
15:00:48,231 ERROR [STDERR]     at 
com.hp.hpl.jena.rdf.arp.WrappedException.throwMe(WrappedException.java:74)
15:00:48,231 ERROR [STDERR]     at 
com.hp.hpl.jena.rdf.arp.ARPFilter.parse(ARPFilter.java:316)
15:00:48,231 ERROR [STDERR]     at 
com.hp.hpl.jena.rdf.arp.JenaReader.read(JenaReader.java:221)
15:00:48,231 ERROR [STDERR]     at 
com.hp.hpl.jena.rdf.arp.JenaReader.read(JenaReader.java:209)
15:00:48,231 ERROR [STDERR]     at 
com.hp.hpl.jena.rdf.arp.JenaReader.read(JenaReader.java:239)
15:00:48,231 ERROR [STDERR]     at 
org.biomoby.shared.extended.DataTypeParser.getMobyDataTypesFromRDF(DataTypeP
arser.java:161)

or

Cannot parse MOBY Service Type Ontology: java.lang.NullPointerException
15:00:02,396 ERROR [STDERR] java.lang.NullPointerException
15:00:02,396 ERROR [STDERR]     at 
org.biomoby.shared.extended.DataTypeParser.getMobyDataTypesFromRDF(DataTypeP
arser.java:182)

is this a current or general error ?

Does the moving of MobyCentral requires an cvs update ?

thanks
andreas

-- 
Andreas Groscurth
Bioinformatics Developer
Max Planck Institute for Plant Breeding Research
Carl-von-Linné-Weg 10
50829 Cologne
Germany
E-mail:    groscurt at mpiz-koeln.mpg.de
Phone:    +49(0)221-5062-449

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