[MOBY-dev] The agent

[Edward Kawas]

What is your service description?

Eddie 

> -----Original Message-----
> From: moby-dev-bounces at lists.open-bio.org 
> [mailto:moby-dev-bounces at lists.open-bio.org] On Behalf Of 
> leireZamacola
> Sent: Monday, March 13, 2006 10:30 AM
> To: Core developer announcements
> Subject: Re: [MOBY-dev] The agent
> 
> Hi everyone,
> 
> I am developing biomoby services in Java.
> 
> I compile the service and deploy it without problems but when 
> I want to run the service I get this error.
> 
> Does anyone know why?
> 
> cheers
> 
> 
> <?xml version="1.0" encoding="UTF-8"?>
> 
> <moby:MOBY xmlns:moby="http://www.biomoby.org/moby">
> 
> <moby:mobyContent>
> 
> <moby:serviceNotes>
> 
> <moby:mobyException moby:severity="error">
> 
> <moby:exceptionCode>600</moby:exceptionCode>
> 
> <moby:exceptionMessage>AN ERROR OCCURED DURING THE SERVICE EXECUTION.
> 
> org.biomoby.shared.datatypes.FASTA_AA
> 
> java.lang.ClassCastException: org.biomoby.shared.datatypes.FASTA_AA
> 
> at 
> PMutHotSpot.run.skeletons.RunHotSpotFromFASTASkel.get_FASTA_AA(Unknown
> Source)
> 
> at PMutHotSpot.run.RunHotSpotFromFASTAImpl.processIt(Unknown Source)
> 
> at org.biomoby.service.BaseService.processIt(BaseService.java:292)
> 
> at
> PMutHotSpot.run.skeletons.RunHotSpotFromFASTASkel.RunHotSpotFr
> omFASTA(Unknow
> n Source)
> 
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> 
> at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccess
> orImpl.java:39
> )
> 
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMeth
> odAccessorImpl
> .java:25)
> 
> at java.lang.reflect.Method.invoke(Method.java:585)
> 
> at
> org.jboss.webservice.server.InvokerProviderJSE.invokeServiceEn
> dpoint(Invoker
> ProviderJSE.java:154)
> 
> at
> org.jboss.webservice.server.InvokerProvider.invokeMethod(Invok
> erProvider.jav
> a:305)
> 
> at
> org.jboss.axis.providers.java.RPCProvider.invokeTarget(RPCProv
> ider.java:176)
> 
> at
> org.jboss.webservice.server.InvokerProviderJSE.invokeTarget(In
> vokerProviderJ
> SE.java:93)
> 
> at
> org.jboss.axis.providers.java.RPCProvider.processMessage(RPCPr
> ovider.java:12
> 1)
> 
> at 
> org.jboss.axis.providers.java.JavaProvider.invoke(JavaProvider
> .java:358)
> 
> at
> org.jboss.axis.strategies.InvocationStrategy.visit(InvocationS
> trategy.java:7
> 3)
> 
> at org.jboss.axis.SimpleChain.doVisiting(SimpleChain.java:160)
> 
> at org.jboss.axis.SimpleChain.invoke(SimpleChain.java:123)
> 
> at 
> org.jboss.axis.handlers.soap.SOAPService.invoke(SOAPService.java:560)
> 
> at
> org.jboss.webservice.server.ServerEngine.invokeInternal(Server
> Engine.java:20
> 0)
> 
> at 
> org.jboss.webservice.server.ServerEngine.invoke(ServerEngine.java:89)
> 
> at 
> org.jboss.axis.transport.http.AxisServlet.doPost(AxisServlet.java:911)
> 
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
> 
> at
> org.jboss.axis.transport.http.AxisServletBase.service(AxisServ
> letBase.java:3
> 70)
> 
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:810)
> 
> at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilt
> er(Application
> FilterChain.java:252)
> 
> at
> org.apache.catalina.core.ApplicationFilterChain.doFilter(Appli
> cationFilterCh
> ain.java:173)
> 
> at
> org.jboss.web.tomcat.filters.ReplyHeaderFilter.doFilter(ReplyH
> eaderFilter.ja
> va:81)
> 
> at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilt
> er(Application
> FilterChain.java:202)
> 
> at
> org.apache.catalina.core.ApplicationFilterChain.doFilter(Appli
> cationFilterCh
> ain.java:173)
> 
> at
> org.apache.catalina.core.StandardWrapperValve.invoke(StandardW
> rapperValve.ja
> va:213)
> 
> at
> org.apache.catalina.core.StandardContextValve.invoke(StandardC
> ontextValve.ja
> va:178)
> 
> at
> org.jboss.web.tomcat.security.CustomPrincipalValve.invoke(Cust
> omPrincipalVal
> ve.java:39)
> 
> at
> org.jboss.web.tomcat.security.SecurityAssociationValve.invoke(
> SecurityAssoci
> ationValve.java:159)
> 
> at
> org.jboss.web.tomcat.security.JaccContextValve.invoke(JaccCont
> extValve.java:
> 59)
> 
> at
> org.apache.catalina.core.StandardHostValve.invoke(StandardHost
> Valve.java:126
> )
> 
> at
> org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReport
> Valve.java:105
> )
> 
> at
> org.apache.catalina.core.StandardEngineValve.invoke(StandardEn
> gineValve.java
> :107)
> 
> at
> org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdap
> ter.java:148)
> 
> at
> org.apache.coyote.http11.Http11Processor.process(Http11Process
> or.java:856)
> 
> at
> org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandle
> r.processConne
> ction(Http11Protocol.java:744)
> 
> at
> org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolT
> cpEndpoint.jav
> a:527)
> 
> at
> org.apache.tomcat.util.net.MasterSlaveWorkerThread.run(MasterS
> laveWorkerThre
> ad.java:112)
> 
> at java.lang.Thread.run(Thread.java:595)</moby:exceptionMessage>
> 
> </moby:mobyException>
> 
> </moby:serviceNotes>
> 
> <moby:mobyData moby:queryID="_1_" />
> 
> </moby:mobyContent>
> 
> </moby:MOBY>
> 
> 
> 
> Leire Zamacola Gandiaga
> Molecular Recognition
> Universitat de Barcelona
> IRBB, Parc Cientific de Barcelona
> C. Josep Samitier 1-5,
> 08028 Barcelona
> fax :  + 34 93 403 71 57
> phone: + 34 93 403 71 55
> mail: leire at mmb.pcb.ub.es
> 
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