[MOBY-dev] The agent

[leireZamacola]

Hi everyone,

I am developing biomoby services in Java.

I compile the service and deploy it without problems but when I want to run
the service I get this error.

Does anyone know why?

cheers


<?xml version="1.0" encoding="UTF-8"?>

<moby:MOBY xmlns:moby="http://www.biomoby.org/moby">

<moby:mobyContent>

<moby:serviceNotes>

<moby:mobyException moby:severity="error">

<moby:exceptionCode>600</moby:exceptionCode>

<moby:exceptionMessage>AN ERROR OCCURED DURING THE SERVICE EXECUTION.

org.biomoby.shared.datatypes.FASTA_AA

java.lang.ClassCastException: org.biomoby.shared.datatypes.FASTA_AA

at PMutHotSpot.run.skeletons.RunHotSpotFromFASTASkel.get_FASTA_AA(Unknown
Source)

at PMutHotSpot.run.RunHotSpotFromFASTAImpl.processIt(Unknown Source)

at org.biomoby.service.BaseService.processIt(BaseService.java:292)

at
PMutHotSpot.run.skeletons.RunHotSpotFromFASTASkel.RunHotSpotFromFASTA(Unknow
n Source)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39
)

at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl
.java:25)

at java.lang.reflect.Method.invoke(Method.java:585)

at
org.jboss.webservice.server.InvokerProviderJSE.invokeServiceEndpoint(Invoker
ProviderJSE.java:154)

at
org.jboss.webservice.server.InvokerProvider.invokeMethod(InvokerProvider.jav
a:305)

at
org.jboss.axis.providers.java.RPCProvider.invokeTarget(RPCProvider.java:176)

at
org.jboss.webservice.server.InvokerProviderJSE.invokeTarget(InvokerProviderJ
SE.java:93)

at
org.jboss.axis.providers.java.RPCProvider.processMessage(RPCProvider.java:12
1)

at org.jboss.axis.providers.java.JavaProvider.invoke(JavaProvider.java:358)

at
org.jboss.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:7
3)

at org.jboss.axis.SimpleChain.doVisiting(SimpleChain.java:160)

at org.jboss.axis.SimpleChain.invoke(SimpleChain.java:123)

at org.jboss.axis.handlers.soap.SOAPService.invoke(SOAPService.java:560)

at
org.jboss.webservice.server.ServerEngine.invokeInternal(ServerEngine.java:20
0)

at org.jboss.webservice.server.ServerEngine.invoke(ServerEngine.java:89)

at org.jboss.axis.transport.http.AxisServlet.doPost(AxisServlet.java:911)

at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)

at
org.jboss.axis.transport.http.AxisServletBase.service(AxisServletBase.java:3
70)

at javax.servlet.http.HttpServlet.service(HttpServlet.java:810)

at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Application
FilterChain.java:252)

at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterCh
ain.java:173)

at
org.jboss.web.tomcat.filters.ReplyHeaderFilter.doFilter(ReplyHeaderFilter.ja
va:81)

at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Application
FilterChain.java:202)

at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterCh
ain.java:173)

at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.ja
va:213)

at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.ja
va:178)

at
org.jboss.web.tomcat.security.CustomPrincipalValve.invoke(CustomPrincipalVal
ve.java:39)

at
org.jboss.web.tomcat.security.SecurityAssociationValve.invoke(SecurityAssoci
ationValve.java:159)

at
org.jboss.web.tomcat.security.JaccContextValve.invoke(JaccContextValve.java:
59)

at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126
)

at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105
)

at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java
:107)

at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148)

at
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:856)

at
org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.processConne
ction(Http11Protocol.java:744)

at
org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.jav
a:527)

at
org.apache.tomcat.util.net.MasterSlaveWorkerThread.run(MasterSlaveWorkerThre
ad.java:112)

at java.lang.Thread.run(Thread.java:595)</moby:exceptionMessage>

</moby:mobyException>

</moby:serviceNotes>

<moby:mobyData moby:queryID="_1_" />

</moby:mobyContent>

</moby:MOBY>



Leire Zamacola Gandiaga
Molecular Recognition
Universitat de Barcelona
IRBB, Parc Cientific de Barcelona
C. Josep Samitier 1-5,
08028 Barcelona
fax :  + 34 93 403 71 57
phone: + 34 93 403 71 55
mail: leire at mmb.pcb.ub.es