[MOBY-dev] [moby] BioMOBY at the Oscars

[Edward Kawas]

I did (actually martin did):
http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Java/docs/taverna/guide/in
dex.html 

Eddie

> -----Original Message-----
> From: moby-dev-bounces at biomoby.org 
> [mailto:moby-dev-bounces at biomoby.org] On Behalf Of Mark Wilkinson
> Sent: Wednesday, March 08, 2006 9:54 AM
> To: Core developer announcements
> Subject: Re: [MOBY-dev] [moby] BioMOBY at the Oscars
> 
> Eddie, THIS is why I keep telling you to **put these things up on the
> website!** :-)
> 
> M
> 
> 
> 
> On Wed, 2006-03-08 at 09:50 -0800, Mark Wilkinson wrote:
> > You should talk to Eddie - I think he already has a taverna plugin 
> > that does that...
> > 
> > M
> > 
> > 
> > 
> > On Wed, 2006-03-08 at 16:51 +0000, Stian Soiland wrote:
> > > On 8. mar. 2006, at 16:25, Mark Wilkinson wrote:
> > > 
> > > > urn:lsid:biomoby.org:serviceinstance:org.inab.upc,runFasty: 
> > > > 2006-03-04T08-50-58Z
> > > 
> > > This seems like an OK example, but maybe not a good match 
> for our task.
> > > 
> > > > does that help?  What, specifically, are you looking for in the 
> > > > RDF?  A comprehensive use of all of the predicates, or a "gold 
> > > > standard" for what we consider to be a well-documented (i.e. 
> > > > described) service?
> > > 
> > > More specifically we are looking for good examples of semantic 
> > > descriptions that we can use for Taverna while developing 
> semantic 
> > > linking/browsing/searching. In particular, descriptions of inputs 
> > > and outputs that are a bit more specific than "Object", 
> so that we 
> > > can build GUI elements in Taverna for use cases like this 
> rough description:
> > > 
> > > a) Add a BioMoby processor into the Taverna workflow
> > > b) Click on the process, find that the input is a string 
> described 
> > > as a "GCP_Phenotype"
> > > c) Browse a list of BioMoby services that can provide the output 
> > > type "GCP_Phenotype"
> > > d) Add one of the services to the workflow and connect it
> > > 
> > > Of course, limiting the search by "performs task 
> NCBI_Blast" is also 
> > > nice.
> > > 
> > > 
> > > So a good example would be one (or a few related) 
> services that has 
> > > this kind of information specified and that actually works. :-)
> > > 
> -- 
> 
> --
> Mark Wilkinson
> Asst. Professor, Dept. of Medical Genetics University of 
> British Columbia PI in Bioinformatics, iCAPTURE Centre St. 
> Paul's Hospital, Rm. 166, 1081 Burrard St.
> Vancouver, BC, V6Z 1Y6
> tel: 604 682 2344 x62129
> fax: 604 806 9274
> 
> "For most of this century we have viewed communications as a conduit, 
>        a pipe between physical locations on the planet. 
> What's happened now is that the conduit has become so big and 
> interesting 
>       that communication has become more than a conduit, 
>        it has become a destination in its own right..."
> 
>                 Paul Saffo - Director, Institute for the Future
> 
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