[MOBY-dev] Quick poll

[mark wilkinson]

Yeah that's necessary.  Your code needs to be clever and detect different types of uri's

M


--
Mark Wilkinson
...on the road!


-----Original Message-----
From: Paul Gordon <gordonp at ucalgary.ca>
Date: Tue, 11 Apr 2006 08:09:36 
To:Core developer announcements <moby-dev at lists.open-bio.org>
Subject: Re: [MOBY-dev] Quick poll

It is in the Object ontology, but only the last two lines I guess, which 
look like:

<owl:AnnotationProperty 
rdf:about="http://www.w3.org/2000/01/rdf-schema#comment">

In the file http://bioinfo.icapture.ubc.ca:8090/RESOURCES/MOBY-S/Objects

Which causes the following error (so the problem might actually be that 
org.biomoby.shared.extended.DataTypeParser should ignore this field but 
doesn't?):

Cannot parse MOBY Object Ontology: org.biomoby.shared.MobyException: 
Expected an LSID as a URI, instead got 
http://www.w3.org/2000/01/rdf-schema#comment 200 : LSID must be of the 
form: urn:lsid:<AuthorityID>:<NamespaceID>:<ObjectID>:[RevisionID], got: 
urn:lsid: not found: [http://www.w3.org/2000/01/rdf-schema#comment]

org.biomoby.shared.MobyException: Expected an LSID as a URI, instead got 
http://www.w3.org/2000/01/rdf-schema#comment 200 : LSID must be of the 
form: urn:lsid:<AuthorityID>:<NamespaceID>:<ObjectID>:[RevisionID], got: 
urn:lsid: not found: [http://www.w3.org/2000/01/rdf-schema#comment]

   at 
org.biomoby.shared.extended.DataTypeParser.getMobyDataTypesFromRDF(DataTypeParser.java:173)

> Hi Paul,
>
> Can you send us a copy of what you are seeing, and the URL that you  
> retrieved it from?  From our perspective, it is still LSID-based...
>
> ??
>
> M
>
>
> On Mon, 10 Apr 2006 16:20:36 -0700, Paul Gordon <gordonp at ucalgary.ca>  
> wrote:
>
>   
>> Umm.. the test server has reverted to
>> http://www.w3.org/2000/01/rdf-schema#label  type RDF instead of LSID
>> based.  Is this intentional?  It breaks all my code :-(
>>     
>>> Hi,
>>>
>>> The agent isnt on yet (on mobycentral that is, it is running on the test
>>> registry). We want to make sure that the RDF is 100% correct before the  
>>> agent is
>>> deployed.
>>>
>>> Thanks,
>>>
>>> Eddie
>>>
>>>
>>>       
>>>> -----Original Message-----
>>>> From: moby-dev-bounces at lists.open-bio.org
>>>> [mailto:moby-dev-bounces at lists.open-bio.org] On Behalf Of
>>>> Arnaud Kerhornou
>>>> Sent: Friday, April 07, 2006 2:04 AM
>>>> To: Core developer announcements
>>>> Subject: Re: [MOBY-dev] Quick poll
>>>>
>>>> Hi Eddie,
>>>>
>>>> I have updated my services, and they all have a signature
>>>> URL. I have a RDF document that includes in it all my
>>>> services in there, http://genome.imim.es/webservices/RDFs/services.rdf
>>>>
>>>> i don't use the RDF, i guess in future i could use it for
>>>> parameters and input objects validation - this way validatino
>>>> could be done on the fly generically.
>>>>
>>>> Also, quick question, is the agent on ? Is it going to check
>>>> the RDF document on a regular basis, and being able to update
>>>> the central registry if i modify the specs of my services?
>>>>
>>>> regards,
>>>> Arnaud
>>>>
>>>> Edward Kawas wrote:
>>>>
>>>>         
>>>>> Hi,
>>>>>
>>>>> Just out of curiosity, who is using the RDFs that mobycentral is
>>>>> currently generating. If you are using them, what tasks are
>>>>>
>>>>>           
>>>> you using them for.
>>>>
>>>>         
>>>>> I ask, because the RDF that is generated by mobycentral is
>>>>>
>>>>>           
>>>> different
>>>>
>>>>         
>>>>> than the one that is generated by the test machine. The difference
>>>>> lies on the fact that mobycentral identifies resources
>>>>>
>>>>>           
>>>> based on URIs,
>>>>
>>>>         
>>>>> while the test registry uses LSIDs. There are some other
>>>>>
>>>>>           
>>>> changes, but
>>>>
>>>>         
>>>>> mainly additions (for instance, object ontology rdf now has more
>>>>> information in it, like the authority of the creator, the
>>>>>
>>>>>           
>>>> creators email address, etc).
>>>>
>>>>         
>>>>> We are hoping to deploy the new RDF onto mobycentral very
>>>>>
>>>>>           
>>>> soon, and I
>>>>
>>>>         
>>>>> just want to get a head count of who it is that will yell (beat up,
>>>>> etc) at me ;-)
>>>>>
>>>>> Thanks,
>>>>>
>>>>> Eddie
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>           
>>>> _______________________________________________
>>>> MOBY-dev mailing list
>>>> MOBY-dev at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/moby-dev
>>>>
>>>>         
>>> _______________________________________________
>>> MOBY-dev mailing list
>>> MOBY-dev at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/moby-dev
>>>
>>>       
>> _______________________________________________
>> MOBY-dev mailing list
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>>     
>
>
>
>   

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