[MOBY-dev] Prefixes for generated moby objects

[Paul Gordon]

Him

They do.  In the top level tag, http://www.biomoby.org/moby is defined 
as the default namespace. If the tags don't have that namespace in your 
DOM, you might want to make sure that you've set the parser's namespace 
awareness option to "on".

Cheers,

Paul
> Hello,
>
> I implemented a JMOBY webservice, which returns a BioMoby BLAST-Text object. 
> Content, namespace and ID are added by JMOBY API like this:
>
> BLAST_Text text = new BLAST_Text();
> text.setId("output");
> text.setNamespace("BLAST");
> text.set_content(result);
>
> By executing my BioMoby service I found, that some tags (XML namespaces) in 
> the output XML file were prefixed with "moby:" and all JMoby primitives were 
> not.
> For example:
>
> <?xml version='1.0' encoding='UTF-8'?>
> <moby:MOBY xmlns:moby='http://www.biomoby.org/moby'
> xmlns='http://www.biomoby.org/moby'>
> <moby:mobyContent moby:authority='inb.bsc.es'>
> <moby:mobyData moby:queryID='a0'>
> <moby:Simple  moby:articleName='wublast_report'>
> <moby:BLAST-Text namespace='' id=''>
> <String articleName='content'>                        <-- here
>  
>
> Because of that I've got some problems by parsing the XML output with Java 
> JDOM.
> So my questions are:
>
> Why have the primitives no "moby" XML namespace?
> Is it possible to change the JMoby api so that all primitives get a "moby" XML 
> namespace too?
>
> Thanks,
> Anika
>
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