[MOBY-dev] Re: [moby] Please sir, can I have some more RDF?

[Mark Wilkinson]

If you like, I will ask Eddie to write to you when the updates are done,
and then you will have something stable to play with...

M


On Thu, 2005-11-03 at 12:56 -0800, Mark Wilkinson wrote:
> Hi Dunc!
> 
> I hope you aren't writing another thesis saying nasty things about MOBY!
> 
> Okay, the main problem is that the RDF is not up to date - we're still
> negotiating with Pinar about what the RDF representation of MOBY/myGrid
> services is going to be (in fact, Eddie is here right now and we are
> going over the final details).  As such, when you do what I suggest
> below, you are going to get RDF that is still changing daily.
> 
> Having said all that - there are two ways to get MOBY RDF.  You can get
> it from our RESOURCES script, or by LSID resolution to metadata.
> 
> To get a full dump of MOBY Central as RDF (the old RDF that we will NOT
> be using) go to:
> 
> http://biomoby.org/RESOURCES/MOBY-S/ServiceInstances
> (this takes a while, since it is dynamically generated...)
> 
> Or for a specific service, resolve the LSID:
> 
> urn:lsid:biomoby.org:serviceinstance:service.uri,serviceName
> 
> (e.g.
> urn:lsid:biomoby.org:serviceinstance:www.illuminae.com,getSHound3DNeighboursFromGi)
> 
> We'll have the RDF generator updated in the next few days - hopefully
> today will be the last of our modifications of the RDF structure to be
> myGrid-compatible.
> 
> M
> 
> 
> 
> On Thu, 2005-11-03 at 19:42 +0000, Duncan Hull wrote:
> > Dear Mark / BioMOBYers
> > 
> > Can you advise me on the best way to get the rdf for the service 
> > "EMBOSSbacktranseq"
> > 
> > I just wanted some examples, and found
> > http://www.biomoby.org/moby-live/Java/docs/Testing_service.rdf
> > 
> > ...from martins handy client documentation but not sure if the RDF is up 
> > to date.
> > 
> > Thanks
> > 
> > Duncan
> > 
-- 
"Ontologists do it with the edges!"

Mark Wilkinson
Asst. Professor
Dept. of Medical Genetics
University of British Columbia
PI in Bioinformatics
iCAPTURE Centre
St. Paul's Hospital
Rm. 166, 1081 Burrard St.
Vancouver, BC, V6Z 1Y6
tel: 604 682 2344 x62129
fax: 604 806 9274