[MOBY-dev] questions about gbrowse-moby

[ywong at infobiogen.fr]

After some implementations of webservices in Python, I've noticed that I
was able to query moby services normally, but when I used gbrowse_moby to
query Python webservices, it wasn't successful at all.

My Python API send a string to query services, these services all return
results:
*** Outgoing HTTP headers **********************************************
POST /webservices/predotar.py HTTP/1.0
Host: genoplante-info.infobiogen.fr
User-agent: SOAPpy 0.11.4 (http://pywebsvcs.sf.net)
Content-type: text/xml; charset="UTF-8"
Content-length: 2248
SOAPAction: "http://biomoby.org/#predotarP"
************************************************************************
*** Outgoing SOAP ******************************************************
<?xml version="1.0" encoding="UTF-8"?>
<SOAP-ENV:Envelope
SOAP-ENV:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"
xmlns:SOAP-ENC="http://schemas.xmlsoap.org/soap/encoding/"
xmlns:xsi="http://www.w3.org/1999/XMLSchema-instance"
xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"
xmlns:xsd="http://www.w3.org/1999/XMLSchema">
<SOAP-ENV:Body>
<ns1:predotarP xmlns:ns1="http://biomoby.org/" SOAP-ENC:root="1">
<v1 xsi:type="xsd:string">&lt;?xml version="1.0"
encoding="UTF-8"?&gt;&lt;moby:MOBY
xmlns:moby="http://www.biomoby.org/moby"&gt;&lt;moby:mobyContent&gt;&lt;moby:mobyData
moby:queryID='query'&gt;&lt;moby:Simple&gt;&lt;moby:AminoAcidSequence
&gt;&lt;moby:Integer moby:articleName="Length"
&gt;1256&lt;/moby:Integer&gt;&lt;moby:String
moby:articleName="SequenceString"
&gt;MGLGCGTSIAHEPPMVKCMVMYNGQSSWDMFSPWLVGGDEQPVNMIFEPMRAVTIISNNTPGMVFSGCWPDRYTHENVVGDRFKIINCKFPHQCNNVGAALCCDIRIDSHEGDQDKDEGWQYFEFCHMHAQNNVIWPQQHFGDWNWMWHKQNPKEMCMSRYCEWNKCVWTMGHPCSVRMYGIRLSSNVCSRQAEPAVQNSRGPSETPKEPIHYEGSSNRYGVHKGVSLMNWGNSCMNVINPGTCFIARADNNATVKDWMEPHHAAKLCVCAWQQRSYENAFEKHRAQIGKGSWSSAKMKGRKGNGGQSLMFCSCYHLDTPESMSTTYHIKFCPGLHAMQWRNDEWLSRGWNATKTKDPPFQWNKNVTKHAVEFRKGGTWSTKATEYWGKSHKEWGHNNHPHYVLDWAGCHFCAMESERDWPVQNKRCNQTLHCMDENLNPHITIILWWVWAWCVFYESCPNIEQKVCDKTRHIVLQQCDEDHYVACHHALWMKLWLMAVMHPLHFRYNLGNLTCPMIATMDLEFCHYMWQMYDYKRIYKYDVRNVIAKWGWEMKIQLFTSAHEFPSPMSTAQDKPPMMGSSAVEIWYHPVLYTMYVNISNPNHQHGNGSFEAEVAPPFHKYTSYNSHTRVLITPAYYEFQRLKEPFEHWDWSEPGPYSNITGPYVIALSPCPNEIEVCSKSNQHKTQEIMFMRHIGGLEWGVMYIYWNSWVGRWHWFDPQEGVRNNICNDLVKNPHFYDNAVPVNVQQHRKARICNNMNVKCRCENMPDIMEGHSTIPGLYHEQEFTGEIIHAENECANQVKSLGWVLMWQYPVPEPTEEKPAKSAWLGNGACPPPSRYCMYPNPNPKYPMTACCEHMQEYRRAIHRWNRLNEHKADLTFTEVPVVRRIPVVMSHDGHDCEDICMMRIIADMDRGQWWRHDTWPFYWSSLKEAVFKDKWCPEENCQLLFHEISKEVQKRLPNSKCTRTIPRTNESRHAQWRHGWH!
 NRINSFKTPRQIDQFIIPYYMERMKCPTVPLHCQPVWWFQRSEDCKYDDVKTNEVKMVQGYTMCRMYYSMHIGSLFDYETVALNWSKWMGKLDRYHYSNGFEYDTTHRFATQEVGNQEAHEPHRHFCLAFHSAEDMNRDCHTRYGMGLKIADYETYCVTIWHYNHVKHAGISVFKSTEKSNFIGDPSHIERQIGMRISTVTGECGDPHKVMQSPEPAGRWKFLMFKTHCKKAYLCNSNITFQDQYMHFIKEFVWMREFFNIILDCVPLTPW&lt;/moby:String&gt;&lt;/moby:AminoAcidSequence&gt;&lt;/moby:Simple&gt;&lt;/moby:mobyData&gt;&lt;/moby:mobyContent&gt;&lt;/moby:MOBY&gt;</v1>
</ns1:predotarP>
</SOAP-ENV:Body>
</SOAP-ENV:Envelope>
************************************************************************

here one of the response my service give:
*** Incoming HTTP headers **********************************************
HTTP/1.? 200
Date: Tue, 11 Jan 2005 17:31:49 GMT
Server: Apache
Content-Length: 1441
Connection: close
Content-Type: text/xml; charset="utf-8"
************************************************************************
*** Incoming SOAP ******************************************************
<?xml version="1.0" encoding="utf-8"?>
<SOAP-ENV:Envelope
  xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"
  xmlns:SOAP-ENC="http://schemas.xmlsoap.org/soap/encoding/"
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xmlns:xsd="http://www.w3.org/2001/XMLSchema"
  xmlns:ZSI="http://www.zolera.com/schemas/ZSI/"
  SOAP-ENV:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/" >
<SOAP-ENV:Body>
<predotarPResponse>
<SOAP-ENC:string id="5c8528">&lt;?xml version="1.0"
encoding="UTF-8"?&gt;&lt;moby:MOBY
xmlns:moby="http://www.biomoby.org/moby"&gt;&lt;moby:mobyContent&gt;&lt;moby:mobyData
moby:queryID='query'&gt;&lt;moby:Simple&gt;&lt;moby:PredotarP_result
moby:namespace="" moby:id="" moby:articleName=""&gt;&lt;moby:Float
moby:namespace="" moby:id=""
moby:articleName="ER_Score"&gt;0.01&lt;/moby:Float&gt;&lt;moby:Float
moby:namespace="" moby:id=""
moby:articleName="MIT_Score"&gt;0.01&lt;/moby:Float&gt;&lt;moby:Float
moby:namespace="" moby:id=""
moby:articleName="None_Score"&gt;0.96&lt;/moby:Float&gt;&lt;moby:Float
moby:namespace="" moby:id=""
moby:articleName="P_Score"&gt;0.03&lt;/moby:Float&gt;&lt;moby:String
moby:namespace="" moby:id=""
moby:articleName="Prediction"&gt;&lt;![CDATA[none]]&gt;&lt;/moby:String&gt;&lt;/moby:PredotarP_result&gt;&lt;/moby:Simple&gt;&lt;/moby:mobyData&gt;&lt;/moby:mobyContent&gt;&lt;/moby:MOBY&gt;</SOAP-ENC:string>
</predotarPResponse>
</SOAP-ENV:Body>
</SOAP-ENV:Envelope>
************************************************************************

The question I have is What kind of SOAP messages does gbrowse_moby send
to query services?

Is there any source of gbrowse_moby?