[MOBY-dev] graphs

[Ken Steube]

A service producing AGI_LocusCode/DNASequence can feed a service
consuming NCBI_gi/DNASequence or even NCBI_gi/GenericSequence.
That won't show up in your graph I don't believe.

BTW I registered three new services last night

  plantspGetPSeqFromAGI creates AGI_LocusCode/AminoAcidSequence
  plantspGetDSeqFromAGI creates AGI_LocusCode/DNASequence
  plantspGetRSeqFromAGI creates AGI_LocusCode/RNASequence

These respond to At* IDs that we have in our PlantsP dbase, which are
proteins related to phosphorylation, transports and ubiquitin. Sometime
soon I'll add services to go into the PDB which is housed here and also
PKR, the protein kinase resource.

I'll probably introduce two new ncbi blast services today.

Ken



On Fri, 17 Oct 2003, Martin Senger wrote:

> I am back with yet another pictures. Thanks to your help I think I got it
> right now. But please let me know if you find any (old or new)
> peculiarities (as Mark politely called it, I would say rather 'bugs' :-)).
>
> http://industry.ebi.ac.uk/~senger/jMoby/images/services-LR.png
> http://industry.ebi.ac.uk/~senger/jMoby/images/services-TB.png
>
> Now I am going to add/improve there:
>    * better dealing with collections (for now I assumed that all elements
> in a collection are of the same type which does not need to be true as I
> understand)
>    * service to make these graphs by anybody (a) cgi-bin based, b)
> included in jMoby distribution, later c) Moby service ... the last one I
> plan to work on during the I3C-hackathon because it will be easier to code
> it with Mark in the same room)
>    * make documentation with examples,
>    * and, finally, commit all changes from my laptop...
>
>    Please sent me any comments or advises,
>    Martin
>
>

-- 
-------------------------------------
Ken Steube            steube at sdsc.edu
San Diego Supercomputer Center @ UCSD
San Diego, California             USA