[MOBY-dev] problem building java biomoby

[smontgom at bcgsc.ca]

Hi -
I downloaded the code from CVS, set-up the sh environment, ran it, echo'd
the classpath and saw:

/opt/biomoby/moby/moby-live/Java:/opt/biomoby/moby/moby-live/Java/Clients:
/opt/biomoby/moby/moby-live/Java/lib/alltools.jar:
/opt/axis-1_1/lib/axis-ant.jar:/opt/axis-1_1/lib/axis.jar:
/opt/axis-1_1/lib/commons-discovery.jar:/opt/axis-1_1/lib/commons-logging.jar:
/opt/axis-1_1/lib/jaxrpc.jar:/opt/axis-1_1/lib/log4j-1.2.8.jar:
/opt/axis-1_1/lib/saaj.jar:/opt/axis-1_1/lib/wsdl4j.jar::
/opt/biomoby/moby/moby-live/Java/lib/xercesImpl.jar:
/opt/biomoby/moby/moby-live/Java/lib/xercesSamples.jar:
/opt/biomoby/moby/moby-live/Java/lib/xml-apis.jar:
/opt/biomoby/moby/moby-live/Java/lib/xmlParserAPIs.jar::
/home/smontgom/Software/jakarta-catalina/common/lib/servlet.jar:
/home/smontgom/Software/jakarta-catalina/common/lib/activation.jar

Seems like the makefile uses my home to specify a classpath for
jakarta-catalina that doesn't exist - not a big deal.  Also - it may be
related but my make crashes on:

...
make[3]: Entering directory
`/opt/biomoby/moby/moby-live/Java/org/biomoby/shared/dom/wrappers'
javac  Xerces.java
Xerces.java:11: package org.apache.xerces.parsers does not exist
import org.apache.xerces.parsers.DOMParser;
                                 ^
Xerces.java:24: package dom.wrappers does not exist
    extends dom.wrappers.Xerces
...

seems like the xercesImpl.jar is in the classpath.  Is it looking for
something outside the distro (another version)
thanks for the help on this.

Cheers,
Stephen