[GSoC] 3rd coding week blog post

[Sarah Berkemer]

Hello,
I now have a git repo. The first weeks, I didn't really code something, but
now I started to change the code.
Here it is: https://github.com/bsarah/transalign .

Sarah


On Wed, Jun 4, 2014 at 3:11 AM, Eric Talevich <eric.talevich at gmail.com>
wrote:

> OK, makes sense. Do you have another public repository where your GSoC
> code will be hosted? I'm not very familiar with Darcs, so I'm not sure
> whether it makes more sense to have a branch for your work in Ketil's repo
> (like SourceForge), or as a fork that you control entirely (like GitHub).
> Either way, the goal is to ensure that your GSoC code is publicly available.
>
>
> On Tue, Jun 3, 2014 at 4:23 AM, Sarah Berkemer <sarah.berkemer at gmail.com>
> wrote:
>
>> Hey,
>>
>> the code is written by Ketil Malde and can be downloaded here:
>> http://malde.org/~ketil/biohaskell/transalign/ . I probably should
>> include this into my blog.
>> The 'transalign_prof' version is just the version where I put in some
>> flags to get more detailed statistics. And yes, I did the plots with this
>> program and the Haskell profiling library :) .
>>
>> Sarah
>>
>>
>> On Mon, Jun 2, 2014 at 5:19 PM, Eric Talevich <eric.talevich at gmail.com>
>> wrote:
>>
>>> Hi Sarah,
>>>
>>> This looks very cool so far. Can you point me to the source code for the
>>> script transalign_prof, and was that the same program that generated
>>> those nice plots on the wiki?
>>>
>>> Thanks,
>>> Eric
>>>
>>>
>>>
>>>
>>> On Mon, Jun 2, 2014 at 6:49 AM, Sarah Berkemer <sarah.berkemer at gmail.com
>>> > wrote:
>>>
>>>> Hello,
>>>>
>>>> here is my blogpost and plan for the third coding week.
>>>> In the last week, I did a time and space profiling analysis, showing
>>>> which
>>>> methods are the ones which have the most time and space consumption.
>>>> Here http://biohaskell.org/GSoC_blog/Weeks_1and2 , you can find the
>>>> results
>>>> of the analysis, including plots.
>>>> Now, I know which methods have to be changed. In this week I plan to
>>>> fully
>>>> understand those methods and think about whether to rewrite them or just
>>>> change some parts. The plan for this week can be found here:
>>>> http://biohaskell.org/GSoC_blog/Weeks_3and4 .
>>>>
>>>> Sarah
>>>> _______________________________________________
>>>> GSoC mailing list
>>>> GSoC at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/gsoc
>>>>
>>>
>>>
>>
>