[GSoC] GSOC OBF & GMOD

[Robin Haw]

I¹d prefer not to split Genome Informatics projects between two umbrella
organizations. That will start giving me a headache!
Robin

On 2014-02-27, 2:46 PM, "Fields, Christopher J" <cjfields at illinois.edu>
wrote:

>Ah yes, but then I believe Amelia¹s point is whether this is something
>that the Biojavascript folks (who aren¹t officially one of the OBF Bio*
>but have been accepted as their own GSoC org) might be a better fit.
>Which very well could be Œyes¹ depending on their view of things.  Maybe
>someone can reach out to them and ask?
>
>chris
>
>On Feb 27, 2014, at 1:25 PM, Pjotr Prins <pjotr2014 at thebird.nl> wrote:
>
>> Javascript is also relevant for OBF. In the medium term I expect an
>> explosion of JS functionality. Serving data as JSON would make sense
>> to me.
>> 
>> Pj.
>> 
>> On Thu, Feb 27, 2014 at 08:07:48AM -0800, Amelia Ireland wrote:
>>> Hello all,
>>> 
>>> It might be better if Robin and I looked at the existing project list
>>>and
>>> tried to pick projects that would be more compatible with existing Bio*
>>> libraries. How tightly tied would you want them to be to existing Bio*
>>> libraries? For example, there's one project proposal that would involve
>>> writing server-side software to interact with a database to serve data
>>>to a
>>> genome browser 
>>>(http://gmod.org/wiki/GSoC#JBrowse:_REST_daemon_for_Chado).
>>> The language used is currently up to the student, but we could specify
>>>that
>>> BioPerl (or BioJava?) is used for it.
>>> 
>>> There are also a few projects that require JavaScript, with the
>>>possibility
>>> of creating reusable libraries; presumably these would be more in the
>>> purview of the BioJavaScript group than the OBF?
>>> 
>>> Thanks,
>>> Amelia.
>>> 
>>> 
>>> 
>>> On Thu, Feb 27, 2014 at 1:40 AM, Raoul Jean Pierre Bonnal
>>> <bonnal at ingm.org>wrote:
>>> 
>>>> Dear All,
>>>> these are the projects selected by GMOD.
>>>> Next step is to "slightly" adapt then into obf and I am sure that we
>>>>can
>>>> fit them.
>>>> 
>>>> About firsr prj is it possible to have svg and make if something like
>>>>D3 ?
>>>> just a curuosity.
>>>> 
>>>> About the second projcet why just only drupal, would be possible to
>>>>make
>>>> it more genric?
>>>> 
>>>> Galaxy what about extract charts from galaxy and have a biopython
>>>>module ?
>>>> 
>>>> ps : I am sorry because todat I am off  and I am using my mobile,
>>>>internet
>>>> is limited and i had no time dig into all the details but lets figure
>>>>out.
>>>> 
>>>> Btw for this and other projects I would collect them in the cross
>>>>project
>>>> page by Friday so students have all the week end and we can advertise
>>>>the
>>>> initiative.
>>>> 
>>>> From Robin (GMOD)
>>>> We have three projects that would like to propose as the ???Best of
>>>>GMOD"
>>>> 
>>>> Reactome Pathway Comparison Widget:
>>>> http://gmod.org/wiki/GSoC#Pathway_Comparison_Widget
>>>> 
>>>> Tripal pedigree viewer:
>>>>http://gmod.org/wiki/GSoC#Tripal_Pedigree_Viewer
>>>> 
>>>> Galaxy Charts:
>>>>http://gmod.org/wiki/GSoC#Galaxy_Charts_and_Open_Requests
>>>> 
>>>> What would be the next steps.
>>>> Thanks again for the offer of help.
>>>> Robin
>>>> 
>>>> From: Robin Haw <robin.haw at oicr.on.ca>
>>>> Date: Wednesday, February 26, 2014 at 11:49 AM
>>>> To: "ilpuccio.febo at gmail.com" <ilpuccio.febo at gmail.com>
>>>> Cc: Eric Talevich <eric.talevich at gmail.com>, Amelia Ireland <
>>>> amelia.ireland at gmod.org>
>>>> Subject: Re: Adopting a project
>>>> ??? Mostra testo citato
>>>> 
>>> 
>>> 
>>> 
>>> -- 
>>> Amelia Ireland
>>> GMOD Community Support
>>> Generic Model Organism Database project
>>> http://gmod.org || @gmodproject
>>> 
>>> _______________________________________________
>>> GSoC mailing list
>>> GSoC at lists.open-bio.org
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