[GSoC] GSOC OBF & GMOD

[Pjotr Prins]

Javascript is also relevant for OBF. In the medium term I expect an
explosion of JS functionality. Serving data as JSON would make sense
to me.

Pj.

On Thu, Feb 27, 2014 at 08:07:48AM -0800, Amelia Ireland wrote:
> Hello all,
> 
> It might be better if Robin and I looked at the existing project list and
> tried to pick projects that would be more compatible with existing Bio*
> libraries. How tightly tied would you want them to be to existing Bio*
> libraries? For example, there's one project proposal that would involve
> writing server-side software to interact with a database to serve data to a
> genome browser (http://gmod.org/wiki/GSoC#JBrowse:_REST_daemon_for_Chado).
> The language used is currently up to the student, but we could specify that
> BioPerl (or BioJava?) is used for it.
> 
> There are also a few projects that require JavaScript, with the possibility
> of creating reusable libraries; presumably these would be more in the
> purview of the BioJavaScript group than the OBF?
> 
> Thanks,
> Amelia.
> 
> 
> 
> On Thu, Feb 27, 2014 at 1:40 AM, Raoul Jean Pierre Bonnal
> <bonnal at ingm.org>wrote:
> 
> > Dear All,
> > these are the projects selected by GMOD.
> > Next step is to "slightly" adapt then into obf and I am sure that we can
> > fit them.
> >
> > About firsr prj is it possible to have svg and make if something like D3 ?
> > just a curuosity.
> >
> > About the second projcet why just only drupal, would be possible to make
> > it more genric?
> >
> > Galaxy what about extract charts from galaxy and have a biopython module ?
> >
> > ps : I am sorry because todat I am off  and I am using my mobile, internet
> > is limited and i had no time dig into all the details but lets figure out.
> >
> > Btw for this and other projects I would collect them in the cross project
> > page by Friday so students have all the week end and we can advertise the
> > initiative.
> >
> > From Robin (GMOD)
> > We have three projects that would like to propose as the ???Best of GMOD"
> >
> > Reactome Pathway Comparison Widget:
> > http://gmod.org/wiki/GSoC#Pathway_Comparison_Widget
> >
> > Tripal pedigree viewer: http://gmod.org/wiki/GSoC#Tripal_Pedigree_Viewer
> >
> > Galaxy Charts: http://gmod.org/wiki/GSoC#Galaxy_Charts_and_Open_Requests
> >
> > What would be the next steps.
> > Thanks again for the offer of help.
> > Robin
> >
> > From: Robin Haw <robin.haw at oicr.on.ca>
> > Date: Wednesday, February 26, 2014 at 11:49 AM
> > To: "ilpuccio.febo at gmail.com" <ilpuccio.febo at gmail.com>
> > Cc: Eric Talevich <eric.talevich at gmail.com>, Amelia Ireland <
> > amelia.ireland at gmod.org>
> > Subject: Re: Adopting a project
> > ??? Mostra testo citato
> >
> 
> 
> 
> -- 
> Amelia Ireland
> GMOD Community Support
> Generic Model Organism Database project
> http://gmod.org || @gmodproject
> 
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