[GSoC] GSOC OBF & GMOD

[Amelia Ireland]

Hello all,

It might be better if Robin and I looked at the existing project list and
tried to pick projects that would be more compatible with existing Bio*
libraries. How tightly tied would you want them to be to existing Bio*
libraries? For example, there's one project proposal that would involve
writing server-side software to interact with a database to serve data to a
genome browser (http://gmod.org/wiki/GSoC#JBrowse:_REST_daemon_for_Chado).
The language used is currently up to the student, but we could specify that
BioPerl (or BioJava?) is used for it.

There are also a few projects that require JavaScript, with the possibility
of creating reusable libraries; presumably these would be more in the
purview of the BioJavaScript group than the OBF?

Thanks,
Amelia.



On Thu, Feb 27, 2014 at 1:40 AM, Raoul Jean Pierre Bonnal
<bonnal at ingm.org>wrote:

> Dear All,
> these are the projects selected by GMOD.
> Next step is to "slightly" adapt then into obf and I am sure that we can
> fit them.
>
> About firsr prj is it possible to have svg and make if something like D3 ?
> just a curuosity.
>
> About the second projcet why just only drupal, would be possible to make
> it more genric?
>
> Galaxy what about extract charts from galaxy and have a biopython module ?
>
> ps : I am sorry because todat I am off  and I am using my mobile, internet
> is limited and i had no time dig into all the details but lets figure out.
>
> Btw for this and other projects I would collect them in the cross project
> page by Friday so students have all the week end and we can advertise the
> initiative.
>
> From Robin (GMOD)
> We have three projects that would like to propose as the “Best of GMOD"
>
> Reactome Pathway Comparison Widget:
> http://gmod.org/wiki/GSoC#Pathway_Comparison_Widget
>
> Tripal pedigree viewer: http://gmod.org/wiki/GSoC#Tripal_Pedigree_Viewer
>
> Galaxy Charts: http://gmod.org/wiki/GSoC#Galaxy_Charts_and_Open_Requests
>
> What would be the next steps.
> Thanks again for the offer of help.
> Robin
>
> From: Robin Haw <robin.haw at oicr.on.ca>
> Date: Wednesday, February 26, 2014 at 11:49 AM
> To: "ilpuccio.febo at gmail.com" <ilpuccio.febo at gmail.com>
> Cc: Eric Talevich <eric.talevich at gmail.com>, Amelia Ireland <
> amelia.ireland at gmod.org>
> Subject: Re: Adopting a project
> ▶ Mostra testo citato
>



-- 
Amelia Ireland
GMOD Community Support
Generic Model Organism Database project
http://gmod.org || @gmodproject