[GSoC] [BioRuby] GSoC final report

[Hilmar Lapp]

Indeed, congratulations to all of OBF's 2012 GSoC students and mentors - great job!

It'd be great to have a summary blog post on the OBF news blog - anyone up for composing that?

	-hilmar

On Aug 22, 2012, at 12:16 AM, Fields, Christopher J wrote:

> Wholeheartedly agree.  Congrats Artem on a job well done!
> 
> chris
> 
> On Aug 20, 2012, at 4:55 AM, Pjotr Prins <pjotr.public14 at thebird.nl> wrote:
> 
>> Thank you Artem,
>> 
>> Great job.
>> 
>> Pj.
>> 
>> On Mon, Aug 20, 2012 at 01:47:18PM +0400, Artem Tarasov wrote:
>>> Hi all,
>>> 
>>> here's a wrap-up of what was added/fixed in sambamba and Ruby bindings
>>> during the last couple of weeks:
>>> http://lomereiter.wordpress.com/2012/08/20/gsoc-weekly-report-12/
>>> 
>>> * Tools don't require input files to be seekable anymore, allowing to work
>>> with e.g. /dev/stdin and /dev/stdout
>>> * I've added an option of MessagePack output, that drastically improved
>>> speed of bindings (2-4x speedup depending on configuration)
>>> * The gem is on Travis CI now, passing tests on MRI 1.9.2/1.9.3. (JRuby
>>> also works, but on Travis there're problems with popen, same as with
>>> BioRuby)
>>> * The tool 'sambamba_filter' is now available on Galaxy Tool Shed.
>>> 
>>> 
>>> It's been a great summer. Thank you OBF/BioRuby folks :)
>>> 
>>> 
>>> --
>>> Artem
>>> _______________________________________________
>>> BioRuby Project - http://www.bioruby.org/
>>> BioRuby mailing list
>>> BioRuby at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioruby
>>> 
>> _______________________________________________
>> BioRuby Project - http://www.bioruby.org/
>> BioRuby mailing list
>> BioRuby at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioruby
> 
> 
> _______________________________________________
> GSoC mailing list
> GSoC at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/gsoc

-- 
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: Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net :
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