[GSoC] [BioRuby] GSoC final report

[Fields, Christopher J]

Wholeheartedly agree.  Congrats Artem on a job well done!

chris

On Aug 20, 2012, at 4:55 AM, Pjotr Prins <pjotr.public14 at thebird.nl> wrote:

> Thank you Artem,
> 
> Great job.
> 
> Pj.
> 
> On Mon, Aug 20, 2012 at 01:47:18PM +0400, Artem Tarasov wrote:
>> Hi all,
>> 
>> here's a wrap-up of what was added/fixed in sambamba and Ruby bindings
>> during the last couple of weeks:
>> http://lomereiter.wordpress.com/2012/08/20/gsoc-weekly-report-12/
>> 
>> * Tools don't require input files to be seekable anymore, allowing to work
>> with e.g. /dev/stdin and /dev/stdout
>> * I've added an option of MessagePack output, that drastically improved
>> speed of bindings (2-4x speedup depending on configuration)
>> * The gem is on Travis CI now, passing tests on MRI 1.9.2/1.9.3. (JRuby
>> also works, but on Travis there're problems with popen, same as with
>> BioRuby)
>> * The tool 'sambamba_filter' is now available on Galaxy Tool Shed.
>> 
>> 
>> It's been a great summer. Thank you OBF/BioRuby folks :)
>> 
>> 
>> --
>> Artem
>> _______________________________________________
>> BioRuby Project - http://www.bioruby.org/
>> BioRuby mailing list
>> BioRuby at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioruby
>> 
> _______________________________________________
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