[EMBOSS] What causes this NEEDLE warning?

[B Enn]

Hello All,

Here's the Pastebin Link for the two sequences pasted as is. The alignment
is generated without any problem I guess. I've checked it with the online
version at EBI.

The EMBOSSVERSION is : 2.10.0-Win-0.8


http://pastebin.com/DUghDQyq




On Fri, Oct 25, 2013 at 12:42 PM, B Enn <witch.of.agnessi at gmail.com> wrote:

> Hello All,
>
> Here's the Pastebin Link for the two sequences pasted as is. The alignment
> is generated without any problem I guess. I've checked it with the online
> version at EBI
>
> http://pastebin.com/DUghDQyq
>
>
> On Fri, Oct 25, 2013 at 8:17 AM, Chenna Ramu <chenna at embl-heidelberg.de>wrote:
>
>> Hi,
>>
>> Most probably because of some non-printable ascii characters,
>> often the case when you transfer your files from different operating
>> systems. You cannot find this by visual inspection.
>>
>> The offending line/character should be accompanied with
>> the warning. For developers, If the offender is an ASCII  char
>> then the numerical value of the ascii character should be printed.
>>
>> Ramu
>>
>> On Fri, 25 Oct 2013, B Enn wrote:
>>
>> > Hi,
>> >
>> > I'm getting the following warning message in NEEDLE:
>> >
>> > "Warning: Sequence character string not found in ajSeqCvtKS", I've
>> checked
>> > thoroughly and my sequences don't have any other characters than the
>> usual
>> > ATGC.
>> >
>> > Thanks
>> > _______________________________________________
>> > EMBOSS mailing list
>> > EMBOSS at lists.open-bio.org
>> > http://lists.open-bio.org/mailman/listinfo/emboss
>> >
>>
>
>