[EMBOSS] What causes this NEEDLE warning?
witch.of.agnessi at gmail.com
Fri Oct 25 16:46:44 UTC 2013
Here's the Pastebin Link for the two sequences pasted as is. The alignment
is generated without any problem I guess. I've checked it with the online
version at EBI.
The EMBOSSVERSION is : 2.10.0-Win-0.8
On Fri, Oct 25, 2013 at 12:42 PM, B Enn <witch.of.agnessi at gmail.com> wrote:
> Hello All,
> Here's the Pastebin Link for the two sequences pasted as is. The alignment
> is generated without any problem I guess. I've checked it with the online
> version at EBI
> On Fri, Oct 25, 2013 at 8:17 AM, Chenna Ramu <chenna at embl-heidelberg.de>wrote:
>> Most probably because of some non-printable ascii characters,
>> often the case when you transfer your files from different operating
>> systems. You cannot find this by visual inspection.
>> The offending line/character should be accompanied with
>> the warning. For developers, If the offender is an ASCII char
>> then the numerical value of the ascii character should be printed.
>> On Fri, 25 Oct 2013, B Enn wrote:
>> > Hi,
>> > I'm getting the following warning message in NEEDLE:
>> > "Warning: Sequence character string not found in ajSeqCvtKS", I've
>> > thoroughly and my sequences don't have any other characters than the
>> > ATGC.
>> > Thanks
>> > _______________________________________________
>> > EMBOSS mailing list
>> > EMBOSS at lists.open-bio.org
>> > http://lists.open-bio.org/mailman/listinfo/emboss
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