[EMBOSS] What causes this NEEDLE warning?

[B Enn]

Hello All,

Here's the Pastebin Link for the two sequences pasted as is. The alignment
is generated without any problem I guess. I've checked it with the online
version at EBI

http://pastebin.com/DUghDQyq


On Fri, Oct 25, 2013 at 8:17 AM, Chenna Ramu <chenna at embl-heidelberg.de>wrote:

> Hi,
>
> Most probably because of some non-printable ascii characters,
> often the case when you transfer your files from different operating
> systems. You cannot find this by visual inspection.
>
> The offending line/character should be accompanied with
> the warning. For developers, If the offender is an ASCII  char
> then the numerical value of the ascii character should be printed.
>
> Ramu
>
> On Fri, 25 Oct 2013, B Enn wrote:
>
> > Hi,
> >
> > I'm getting the following warning message in NEEDLE:
> >
> > "Warning: Sequence character string not found in ajSeqCvtKS", I've
> checked
> > thoroughly and my sequences don't have any other characters than the
> usual
> > ATGC.
> >
> > Thanks
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> >
>