[EMBOSS] Antwort: Vienna in Emboss/Emboss-Explorer on Ubuntu?

[Wolfgang Rumpf]

David, I suspected as much - I think my real concern is that I don't necessarily know the proper command-line syntax to control where the installation occurs.  My EMBOSS proper is in /usr/lib/emboss/; there appear to be additional files in /usr/share/emboss (e.g. acd, data, doc) and in /usr/share/emboss-explorer.  These should be the default locations for the packages from the Software Center in Ubuntu.

So given that, when I configure Vienna, do I tell Vienna that it will live in /usr/share/emboss by typing  ./configure --prefix=/usr/lib/emboss - or is there something I'm missing?


Wolfgang

Dr. Wolfgang Rumpf
Product Specialist, Rescentris Inc.
Adjunct Faculty, Dept. of Biotechnology, UMUC
--------------------------------------------------------
wolfgang.rumpf at rescentris.com
wolfgang.rumpf at gmail.com

Mobile - (614) 638-6797
Skype - wolfgang.rumpf



On Mar 16, 2011, at 5:25 AM, david.bauer at bayer.com wrote:

> 
> Hi, 
> 
> the emboss-explorer creates the html menu on the fly by calling the emboss program wossname. 
> So if you install the Vienna embassy package just in the same place like the main emboss, the vrnafold etc. should appear in the emboss-explorer. 
> But I'm not using it on Ubuntu so I do not know if there are any Ubuntu specific issues. 
> 
> HTH, 
> David. 
> 
> emboss-bounces at lists.open-bio.org schrieb am 15/03/2011 21:49:47:
> 
> > One of the ideas I try to teach in my bioinformatics class is RNA 
> > folding - and as such I'd love to add an RNA folding algorithm to my
> > bioinformatics server.  It seems like the "easiest" path might be 
> > Vienna since there's an EMBOSS port of it.  I'm not sure how to 
> > proceed, however - I've downloaded the source (VIENNA-1.7.2) and 
> > know the rough procedure for getting it installed, but I want it to 
> > "hook in" to my existing Ubuntu EMBOSS-Explorer (which is how my 
> > students access all of the other analyses we do).  Any ideas how to 
> > modify the installation to install to the correct path so that it 
> > will be available in my existing applications list?
> > 
> > Any help appreciated - thanks in advance!
> > 
> > 
> > Wolfgang
> > 
> > Dr. Wolfgang Rumpf
> > Product Specialist, Rescentris Inc.
> > Adjunct Faculty, Dept. of Biotechnology, UMUC
> > --------------------------------------------------------
> > wolfgang.rumpf at rescentris.com
> > wolfgang.rumpf at gmail.com
> > 
> > Mobile - (614) 638-6797
> > Skype - wolfgang.rumpf
> > 
> > 
> > 
> > 
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