[EMBOSS] trimming mRNA to coding region, enroute to dicodon analysis

Marvin Stodolsky marvin.stodolsky at gmail.com
Tue Mar 15 17:27:00 UTC 2011

Starting with a large mRNA  fasta repository,
what is the route to generating a derivative with the untranslated
leader and post-stop codon segments trimmed off the mRNAs

This is enroute to a dicodon usage analysis, already written as a BASH
script calling PERL modules.
If anyone is interested in such applications, let me know.
pdc (parse dicodons) works fine, taking about a second per pre-trimmed
mRNA as it retreives from a FASTA repository.
But before providing it to a Novice community, some fool proofing best be done.

Marvin.Stodolsky at gmail.com

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