Peter Rice pmr at ebi.ac.uk
Thu Mar 10 01:00:56 UTC 2011

On 09/03/2011 23:31, Iain Drummond wrote:
> Hi Kevin,
> For starters i would get rid of the square brackets ("[]") in your command;
> i don't think these are necessary.

That's the right answer. Qualifiers on the command line must start with 
'-' otherwise they are counted as 'parameters'. The square brackets are 
hiding the crucial dashes.


Peter Rice

> On 3/9/11 6:10 PM, "Kevin Egan"<egorleg at gmail.com>  wrote:
>> Hi
>> I entered the information as follows
>> dotmatcher -asequence cam3.txt -bsequence TCH3A.txt [-matrixfile EDNAFULL]
>> [-windowsize 10] [-threshold 70]
>> but got a 'too many parameters' error message.

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