[EMBOSS] SAM format
stephen.taylor at imm.ox.ac.uk
Mon Jan 24 11:09:05 UTC 2011
Hi again Peter,
> On 01/20/11 09:17, Stephen Taylor wrote:
>> Is there a bug in the gff3 output of fuzznuc?
>> ##gff-version 3
>> ##sequence-region chr21 1 46944323
>> #!Date 2011-01-20
>> #!Type DNA
>> #!Source-version EMBOSS 6.3.1
>> chr21 fuzznuc nucleotide_motif 13362906 13362942 37.000 + . ID="chr21.1";note="*pat pattern"
>> It would be nice to actually show the pattern matched in the note field.
> or both. What it shows is the "name" of the pattern, which usually
> defaults to pattern.
Please can you define 'usually' i.e. What are the 'rules' for getting it to show the pattern? Usual behaviour when I run
it, is it shows note="*pat pattern".
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