[EMBOSS] SAM format

[Peter Rice]

On 01/20/11 09:17, Stephen Taylor wrote:

> Is there a bug in the gff3 output of fuzznuc?
>
> ##gff-version 3
> ##sequence-region chr21 1 46944323
> #!Date 2011-01-20
> #!Type DNA
> #!Source-version EMBOSS 6.3.1
> chr21   fuzznuc nucleotide_motif        13362906        13362942        37.000  +       .       ID="chr21.1";note="*pat pattern"
>
> It would be nice to actually show the pattern matched in the note field.

or both. What it shows is the "name" of the pattern, which usually 
defaults to pattern. We could show the name and then the pattern. I will 
add it to the next release.

Thanks for the suggestion.

Peter