[EMBOSS] SAM format
pmr at ebi.ac.uk
Thu Jan 20 09:40:35 UTC 2011
On 01/20/11 09:17, Stephen Taylor wrote:
> Is there a bug in the gff3 output of fuzznuc?
> ##gff-version 3
> ##sequence-region chr21 1 46944323
> #!Date 2011-01-20
> #!Type DNA
> #!Source-version EMBOSS 6.3.1
> chr21 fuzznuc nucleotide_motif 13362906 13362942 37.000 + . ID="chr21.1";note="*pat pattern"
> It would be nice to actually show the pattern matched in the note field.
or both. What it shows is the "name" of the pattern, which usually
defaults to pattern. We could show the name and then the pattern. I will
add it to the next release.
Thanks for the suggestion.
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