[EMBOSS] SAM format

Stephen Taylor stephen.taylor at imm.ox.ac.uk
Thu Jan 20 09:06:59 UTC 2011

Hi Peter,

>> Is EMBOSS planning to release tools that produce SAM format in the near
>> future or is it more likely to be on the customary July 15th release?
> The last release EMBOSS 6.3.1 has SAM as an output format for sequences
> and pairwise alignments (-oformat sam and -aformat sam respectively).
> What data would you like to represent in SAM format, and are there extra
> fields you would like us to include?

So it does! Excellent.

Sadly, fuzznuc doesn't seem to work using aformat or oformat. Is that due to be supported?



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