[EMBOSS] SAM format

Peter Rice pmr at ebi.ac.uk
Thu Jan 20 08:16:39 UTC 2011

On 01/19/11 16:09, Stephen Taylor wrote:
> Hi,
> Is EMBOSS planning to release tools that produce SAM format in the near
> future or is it more likely to be on the customary July 15th release?

The last release EMBOSS 6.3.1 has SAM as an output format for sequences 
and pairwise alignments (-oformat sam and -aformat sam respectively).

What data would you like to represent in SAM format, and are there extra 
fields you would like us to include?


Peter Rice

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