[EMBOSS] a bug?

Aldrin Lugena alugena at aramayolab.org
Fri Aug 19 23:38:33 UTC 2011


Hi.  Our lab installed the newest version of EMBOSS in our own server.  When
we type wossname, we get this:

Finds programs by keywords in their short description
Text to search for, or blank to list all programs:

which is the right result.

However, after typing "seqret" then hitting return, we are getting these:

Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/seqrettype.acd: bad
ACD relation '/edam/data/0000848 Sequence'
Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/seqrettype.acd: bad
ACD relation '/edam/data/0000849 Sequence record'
Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/seqrettype.acd: bad
ACD relation '/edam/data/0002178 1 or more'
Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/sqltest.acd: bad ACD
relation '/edam/topic/0000220 File handling'
Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/sqltest.acd: bad ACD
relation '/edam/operation/0000336 File debugging'
Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/testplot.acd: bad ACD
relation '/edam/topic/0000220 File handling'
Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/testplot.acd: bad ACD
relation '/edam/operation/0000336 File debugging'
Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/testplot.acd: bad ACD
relation '/edam/data/0002152 Rendering parameter'
Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/testplot.acd: bad ACD
relation '/edam/data/0002135 Toggle'
Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/testplot.acd: bad ACD
relation '/edam/data/0002142 EMBOSS graph'
Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/treetypedisplay.acd:
bad ACD relation '/edam/topic/0000220 File handling'
Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/treetypedisplay.acd:
bad ACD relation '/edam/operation/0000336 File debugging'
Error: /usr/local/bioinfosoft/emboss/share/EMBOSS/acd/treetypedisplay.acd:
bad ACD relation '/edam/data/0002142 EMBOSS graph'

These are just a sample because there are tons of errors along the same
lines.

What is the reason for these errors?  Also, what can we do to fix it?

Thanks so much for reading this email.  Hopefully to hear from someone soon.

-Aldrin



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