[EMBOSS] db records retrieve

Alessandro Bruselles a.bruselles at gmail.com
Fri Apr 8 10:27:31 UTC 2011


Hi all,
I'm not able to retrieve sequences starting from official gene symbols (e.g.
BCL2L10),
what db do I have to use?

This is the output of whichdb:

*$ whichdb BCL2L10 -debug
Search all sequence databases for an entry and retrieve it
Output file [outfile.whichdb]: stdout
Warning: Cannot open division file '<null>' for database 'tsw'
Warning: seqCdQry failed
Warning: Cannot open division file '<null>' for database 'emblnew'
Warning: seqCdQry failed
Warning: Cannot open division file '<null>' for database 'trembl'
Warning: seqCdQry failed
Warning: Cannot open division file '<null>' for database 'nbrf'

   EMBOSS An error in ajseqdb.c at line 5350:
seqCdQryOpen failed*

Thanks



More information about the EMBOSS mailing list