[EMBOSS] How to include homing endonucleases?

[Jon Ison]

Hi Stefanie

Apologies no reply sooner.

You should use rebaseextract
http://emboss.sourceforge.net/apps/cvs/emboss/apps/rebaseextract.html

Details are in the "Data files" section of the "restrict" docs:
http://emboss.sourceforge.net/apps/cvs/emboss/apps/restrict.html

Cheers

Jon




> Hi,
>
> Rebase got a separate file listing all homing  endonuclease
> (ftp://ftp.neb.com/pub/rebase/homing.103), how can I index that file
> as an alternative to rebase? The Emboss  program restrict have the
> option to use a specific datafile, but it's not clear what format that
> file should be?
>
> Regards,
>
> Stefanie Lager
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