[EMBOSS] Trim polyA from fastq files

[Peter Rice]

On 01/10/09 15:04, Peter wrote:
> On Thu, Oct 1, 2009 at 1:53 PM, michael watson (IAH-C)
> <michael.watson at bbsrc.ac.uk>  wrote:
>> Thanks for that.
>>
>> Is it possible to preserve the fastq format?  My input was fastq, I also put .fastq as my output, but it only gave me straight fasta

The filename can be anything. You need -osformat fastq-sanger on the 
command line to set the output format.

regards,

Peter Rice