[EMBOSS] Bootstrap

[Achille Zappa]

Hi !!
in my tests using emboss apps in Taverna I tried to bootstrap my alignment
to obtain a phylogenetic tree. I used fseqboot to perform the
bootstrapping for my proteins in this manner :
alignments -> fseqboot -> fprotdist -> fneighbor
but it fails and returns a message like this :

ERROR 2009-05-05 10:43:02,125 Failure while executing task fneighbor
uk.ac.soton.itinnovation.taverna.enactor.entities.TaskExecutionException:
Soapla
b call returned an error : Summary:
        Completed: Erroneously
        Termination status: 139
        Started:   2009-May-05 09:42:24 (BST)
        Ended:     2009-May-05 09:42:25 (BST)
        Duration:  0:00:00.411
Report:
Some error messages were reported.

Name: phylogeny_distance_matrix.fneighbor
Job ID: phylogeny_distance_matrix.fneighbor_7cb923b5.120e2d551e0._7f3e
Program and parameters:
/ebi/extserv/bin/EMBOSS-4.1.0/bin/fneighbor
-datafile
/ebi/extserv/soaplab-work/tc-soaplab-emboss4/SANDBOX/phylogeny_distance_matrix.f
neighbor_7cb923b5.120e2d551e0._7f3e/i_datafile
-treetype
n
-outfile
/ebi/extserv/soaplab-work/tc-soaplab-emboss4/SANDBOX/phylogeny_distance_matrix.f
neighbor_7cb923b5.120e2d551e0._7f3e/o_outfile
-outtreefile
/ebi/extserv/soaplab-work/tc-soaplab-emboss4/SANDBOX/phylogeny_distance_matrix.f
neighbor_7cb923b5.120e2d551e0._7f3e/o_outtreefiletreefile
-auto
--- end of parameters
Exit code: 139

Standard error stream:
/homes/tc_user/.lsbatch/1241512944.708672: line 8: 14611 Segmentation fault
 (core dumped) /ebi/extserv/bin/EMBOSS-4.1.0/bin/fneighbor -datafile
/ebi/extser
v/soaplab-work/tc-soaplab-emboss4/SANDBOX/phylogeny_distance_matrix.fneighbor_7c
b923b5.120e2d551e0._7f3e/i_datafile -treetype n -outfile
/ebi/extserv/soaplab-wo
rk/tc-soaplab-emboss4/SANDBOX/phylogeny_distance_matrix.fneighbor_7cb923b5.120e2
d551e0._7f3e/o_outfile -outtreefile
/ebi/extserv/soaplab-work/tc-soaplab-emboss4
/SANDBOX/phylogeny_distance_matrix.fneighbor_7cb923b5.120e2d551e0._7f3e/o_outtre
efiletreefile -auto

in attach there are the input file and the workflow I used.
Could you tell me where is my error?!
thank you
regards

(I'll try to send you a sample of my other apps faults later)

Aiutaci TU ad aiutare TANTI: Il tuo 5 per MILLE a sostegno della nostra RICERCA.
 Come fare:
 Nella prossima dichiarazione dei redditi metti la firma 
 nell'apposito riquadro del 5 per mille,
 scrivendo anche il codice fiscale dell'Istituto Nazionale per la Ricerca sul Cancro di Genova :
  c.f. 80 100 850 108
 Istituto Nazionale per la Ricerca sul Cancro
 L.go R. Benzi, 10 -16132 Genova
 http://www.istge.it
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