[EMBOSS] Trimming illumina short reads based on quality
Ryan Golhar
golharam at umdnj.edu
Tue Dec 1 15:46:20 UTC 2009
Michael,
Doesn't Illumina provide tools to do this? I know with ABI Solid data,
they have a perl script capable of trimming data based on quality scores.
Ryan
michael watson (IAH-C) wrote:
> Hi
>
> I'm sorry if I've not been keeping up to date on what is doubtless a hot topic.
>
> Does EMBOSS allow one to trim short reads based on quality data (from a fastq file)?
>
> If not, I have read that it is planned - any idea when it will be implemented?
>
> Otherwise, alternative suggestions are welcome!
>
> Thanks
> Mick
>
>
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