[EMBOSS] Command line on www-interface

[Guy Bottu]

Grzegorz Machnik wrote:
> If I utilize any of www- based EMBOSS interface, may I use any of the command line qualifiers, i.e. -sreverse2 ? It will be useful for me. Till now I use it succesfuly in UNIX- based software.
> There is no such options to chose it, even in "advanced options" section.

	Dear Grzegorz,

You present here a good question. GUI's for EMBOSS usually have a script that 
converts ACD to HTML, XML or whatever language is used to describe the program 
pages. The "Associated" parameters however do not show up in the ACD files and 
need some ad hoc programmed module in the ACD parser. The GUI's much differ in 
what they offer. I think Jemboss is quite complete, at least for sequences. And 
wEMBOSS at least does support -sbegin1 -send1 -sreverse1 -sbegin2 -send2 -sreverse2.

	Regards,
	Guy Bottu,
	Belgian EMBnet Node and wEMBOSS development team