[EMBOSS] New and confusing problem with infoseq!
michael watson (IAH-C)
michael.watson at bbsrc.ac.uk
Tue Sep 23 10:58:10 UTC 2008
Confusing because this didn't happen before and I haven't changed
anything!
EMBOSS 5.0.0 on RHEL 4.
Why is infoseq complaining about a database? Has my environment changed
because this used to work exactly how I wanted it to!
Mick
-bash-3.00$ infoseq
Displays some simple information about sequences
Input (gapped) sequence(s): Contig0.1399.fasta
Died: Qualifier '-database' not found
-bash-3.00$ more Contig0.1399.fasta
>lcl|Contig0.1399 No definition line found
AGAGGAGAGGAGAGGACAAAATATGTTATTCCTTGGCAAGTGTTCCCTTGAGAAGGTGTCTGTTAGGGCACA
GTCCATTG
GTGCCTGTGAGGAAAAAGAAGCTGAAGGACTTACTGGGCCACACAGTTGCGACCATCAGAGCTGCCAGCAGC
AGCATGTT
TGCTGCTCCAGCTCAGCTGCTGCTGAGACTCAGAGATGTGTGAGTGAGGCCCCAGATGGGGACATACTGAGT
AGGAGGAG
CTGTCCCCAGCAGTGTTTTTTTTTCTGTGCATAACACCATGGGGCTGTGCTTGTCAAGACGTTACAGCAACC
CGGGAAAT
AAGCAAGACCAGAGAATGCTGAGGTTGTTTTGAAGGAGGTGGTCCTGTCTGCTTTCCTGAGAAATGCAAAGA
ACCGTTGC
TCAGTCCAAGGACTGAAAGGCATGAAGGCTCTTCCAACACAAGCTGTGTTCAGAGCCTCGCAAAACCAGCAC
TATGGAAA
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