[EMBOSS] EMBOSS remote server list?

[Ashika Umanga Umagiliya]

Hi again guys,

I found that 'http://srs.embl.de/srs' has almost all the GenBank IDs  i 
want.
What is the URL i should add in emboss.default ?

regards
umanga


Ashika Umanga Umagiliya wrote:
> Hi all,
>
> I used :
>
> DB genbank [
>  type: N
>  method: url
>  format: genbank
>  url: "http://mrs.cmbi.ru.nl/mrs-web/entry.do?db=genbank_release&id=%s"
>  comment: "GenBank from MRS on CMBI" ]
>
> as my GenBank DB ,but some sequence id does not exist in DB.Such as:
>
> Error: Failed to read sequence 'genbank:AJ972404'
> upError: Failed to read sequence 'genbank:AJ972403'
> Error: Failed to read sequence 'genbank:CAAA01078923'
> Error: Failed to read sequence 'genbank:CAAA01073483'
>
>
> Error: Failed to read sequence 'genbank:10129688'
> Error: Failed to read sequence 'genbank:1054739'
> Error: Failed to read sequence 'genbank:112004011'
> Error: Failed to read sequence 'genbank:1136277'
>
> I tried some other servers in 
> http://downloads.lionbio.co.uk/publicsrs.html  and most of the servers 
> didnt give results to the latter ids (10129688-113627).
> Where can i find a server which has all this data?
>
>
> best regards
>
>
>
>
>
>
>
>
>
> Ashika Umanga Umagiliya wrote:
>> Thank toy Sergei and all other guys..
>> Now everything works fine...
>>
>> thanks again
>> Sergei Spirin wrote:
>>>>
>>>> But my query
>>>> entret genbank:AB019441
>>>>
>>>> does not work well.My entry for 'genbank' database is as :
>>>>
>>>> DB genbank [ type: N method: srswww format: genbank release: "NCBI"
>>>> url: "http://www.infobiogen.fr/srsbin/cgi-bin/wgetz"
>>>> comment: "GenBank from Infobiogen" ]
>>>>
>>>> I checked the URL http://www.infobiogen.fr and it says the service 
>>>> is down (or something like that ,cuz i dont speak french ).
>>>>
>>>> Any ideas ?
>>>>
>>>
>>> Add the following to emboss.default:
>>>
>>> DB genbank [
>>>   type: N
>>>   method: url
>>>   format: genbank
>>>   url: 
>>> "http://mrs.cmbi.ru.nl/mrs-web/entry.do?db=genbank_release&id=%s"
>>>   comment: "GenBank from MRS on CMBI" ]
>>>
>>> Sergei
>>>
>>
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>> EMBOSS at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/emboss
>>
>
>