[EMBOSS] EMBOSS remote server list?
rls at ebi.ac.uk
Fri Oct 10 10:00:54 UTC 2008
Probably worth noting that the Genbank, Embl and Ddbj are part of the
INSDC (International Nucleotide Sequence Database Collaboration). The
three databases store and exchange data on a daily basis and have
equivalent content. The only difference being the format in which the
data is distributed. The accession numbers for genebank are the same as
for embl and ddbj - so you should be able to get to these data using the
same method you have defined for embl.
Hope this helps,
Ashika Umanga Umagiliya wrote:
> Thank toy Sergei and all other guys..
> Now everything works fine...
> thanks again
> Sergei Spirin wrote:
>>> But my query
>>> entret genbank:AB019441
>>> does not work well.My entry for 'genbank' database is as :
>>> DB genbank [ type: N method: srswww format: genbank release: "NCBI"
>>> url: "http://www.infobiogen.fr/srsbin/cgi-bin/wgetz"
>>> comment: "GenBank from Infobiogen" ]
>>> I checked the URL http://www.infobiogen.fr and it says the service is
>>> down (or something like that ,cuz i dont speak french ).
>>> Any ideas ?
>> Add the following to emboss.default:
>> DB genbank [
>> type: N
>> method: url
>> format: genbank
>> url: "http://mrs.cmbi.ru.nl/mrs-web/entry.do?db=genbank_release&id=%s"
>> comment: "GenBank from MRS on CMBI" ]
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