[EMBOSS] EMBOSS remote server list?

Rodrigo Lopez rls at ebi.ac.uk
Fri Oct 10 10:00:54 UTC 2008

Probably worth noting that the Genbank, Embl and Ddbj are part of the 
INSDC (International Nucleotide Sequence Database Collaboration). The 
three databases store and exchange data on a daily basis and have 
equivalent content. The only difference being the format in which the 
data is distributed. The accession numbers for genebank are the same as 
for embl and ddbj - so you should be able to get to these data using the 
  same method you have defined for embl.

Hope this helps,


Ashika Umanga Umagiliya wrote:
> Thank toy Sergei and all other guys..
> Now everything works fine...
> thanks again
> Sergei Spirin wrote:
>>> But my query
>>> entret genbank:AB019441
>>> does not work well.My entry for 'genbank' database is as :
>>> DB genbank [ type: N method: srswww format: genbank release: "NCBI"
>>> url: "http://www.infobiogen.fr/srsbin/cgi-bin/wgetz"
>>> comment: "GenBank from Infobiogen" ]
>>> I checked the URL http://www.infobiogen.fr and it says the service is 
>>> down (or something like that ,cuz i dont speak french ).
>>> Any ideas ?
>> Add the following to emboss.default:
>> DB genbank [
>>   type: N
>>   method: url
>>   format: genbank
>>   url: "http://mrs.cmbi.ru.nl/mrs-web/entry.do?db=genbank_release&id=%s"
>>   comment: "GenBank from MRS on CMBI" ]
>> Sergei
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