[EMBOSS] question (Error: Failed to find host 'srs.ebi.ac.uk' for database 'emblebi')
Воробцов Николай Вадимович
Nick at alekta.ru
Fri Mar 30 06:49:57 UTC 2007
Hello, dear Sirs!
The other day I have install the EMBOSS package (version for windows).
Environmen parameters are setted as required:
SET EMBOSS_ROOT=D:\Emboss-MS
SET EMBOSS_ACDROOT=D:\Emboss-MS\acd
SET EMBOSS_DATA=D:\Emboss-MS\data
Please, help me to solve a problem. Why no one's of utilities (seqret, dottup
and others) do not desire work with known databases.
showdb return:
# Name Type ID Qry All Comment
# ============ ==== == === === =======
pir P OK - - PIR from the EBI
sw P OK - - SWISSPROT from the EBI
swissprot P OK - - SWISSPROT from the EBI
uni P OK - - UNIPROT from the EBI
uniprot P OK - - UNIPROT from the EBI
em N OK - - EMBL from the EBI
emblebi N OK - - EMBL from the EBI
gb N OK - - GenBank from Infobiogen
genbank N OK - - GenBank from Infobiogen
refseq N OK - - REFSEQ from EBI
but if I try exec:
seqret emblebi:xlrhodop
than get messages:
Reads and writes (returns) sequences
Error: Failed to find host 'srs.ebi.ac.uk' for database 'emblebi'
Error: Unable to read sequence 'emblebi:xlrhodop'
Died: seqret terminated: Bad value for '-sequence' and no prompt
Any other db-name (from showed by showdb) work also.
Please say what a problem is?
In being thanksgiving for any help!
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