[EMBOSS] Searching for repeats in fuzznuc

[Peter Rice]

Peter Rice wrote:

> Haha ... a side effect of the line in emboss/acd/dreg.acd
> 
> upper: "Y"
> 
> It is supposed to make the patterns upper case, not the filename :-)
> 
> if you remove that line, and are careful to make patterns in upper case, you 
> will be OK until the new release.

or, in ajax/ajacd.c function acdSetRegexp, comment out:

/*
	if(upper)
	    ajStrFmtUpper(&acdReply);
	
	if(lower)
	    ajStrFmtLower(&acdReply);
*/

regards,

Peter