[EMBOSS] Searching for repeats in fuzznuc

[Peter Rice]

Phillip San Miguel wrote:
> Peter Rice wrote:
>> [...]
>>  
>> % fuzznuc -pattern @tg.pat
>>
>> Hope that helps,
>>
>> Peter
>>   
> Hi Peter,
>    Along these lines, I've noticed that dreg wants the pattern file name 
> to be all caps. Eg.

Haha ... a side effect of the line in emboss/acd/dreg.acd

upper: "Y"

It is supposed to make the patterns upper case, not the filename :-)

if you remove that line, and are careful to make patterns in upper case, you 
will be OK until the new release.

Thanks for pointing it out.

Peter