[EMBOSS] Extracting sequences from PDB files.....

[Richard Rothery]

I would like to extract a primary sequence from a local "new" pdb file
that is a model based on a swissprot/uniprot sequence. I would like to
be able to assess the completeness of the model. Is there an EMBOSS
program that will do this?

Thanks,

Richard Rothery

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CIHR Molecular Biology of Membrane Proteins Group,
Department of Biochemistry, University of Alberta,
Edmonton T6G 2H7
Ph. (780) 492-2229 Fax. (780) 492-0886
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-----Original Message-----
From: emboss-bounces at lists.open-bio.org
[mailto:emboss-bounces at lists.open-bio.org] On Behalf Of Guido N. Vacano
Sent: Wednesday, July 18, 2007 11:32 AM
To: EMBOSS Mailing List
Subject: [EMBOSS] JASPAR

Hello--

    What would be involved in using the JASPAR database
(http://jaspar.genereg.net/) with EMBOSS? The TRANSFAC database is not
available for download (not without paying a hefty fee anyway), which
limits the utility of the tfscan program.

Thanks,
Guido Vacano
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