[EMBOSS] pepstat algorythm

[Miguel Ortiz-Lombardia]

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Dear Nyachy,

I don't know about the formula used in pepstat. But there are several
ways of calculating the extintion coefficient of a protein at 280 nm,
using its sequence.

Have a look at the ProtParam (at Expasy) documentation:

http://www.expasy.ch/tools/protparam-doc.html

There, they explain several possible choices and give references about them.


Cheers,



Miguel

En/na 小野塚 智美 ha escrit:
> Dear friends
> 
> I would like to know how the extinction coefficients for
> proteins at 280 nm in pepstat.
> 
> I read the source code and reference paper but still I
> could not understand.
> 
> could somebody tell me the more informative reference
> paper or the formula of the algorithm.
> 
> Thank you in advance
> 
> nyachy
> _______________________________________________
> EMBOSS mailing list
> EMBOSS at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/emboss
> 

- --
Miguel Ortiz Lombardía
Centro de Investigaciones Oncológicas
C/ Melchor Fernández Almagro, 3
28029 Madrid, Spain
Tel. +34 912 246 900
Fax. +34 912 246 976
e-mail: molatwork at yahoo.es
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