[EMBOSS] Jemboss problems with fuzzpro and fuzznuc

Neil Brookes neil.brookes at cancer.org.uk
Wed Sep 13 10:19:30 UTC 2006


I think I have unearthed an issue with fuzzpro/fuzznuz and EMBOSS 4.0.0
The old version in 3.0.0 had a '-mismatch' option. This has changed in 
version 4.0.0 to '-pmismatch'.

The 'mismatch' integer element seems to have been removed from the 
fuzzpro/nuc ACD files.
I'm not sure how/when Jemboss parses the ACD flies, but it doesn't seem 
to be allowing for the  new '-pmismatch' option, and users are unable to 
specify a value.

any ideas ?


Neil Brookes
Cancer Research UK

+ 44 (0)207 2693063

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