[EMBOSS] EMBOSS-Explorer
Ryan Golhar
golharam at umdnj.edu
Mon Sep 11 15:37:39 UTC 2006
Does anyone know how to get a hold of Luke McCarthy? The email address
I have for him is getting bounced back and he hasn't responded to his
sourceforge email.
Since I'm on the topic...I have two problems with EMBOSS-Explorer and
EMBOSS 4.0.0:
1. EMBOSS-Explorer uses the path of
/usr/share/EMBOSS/doc/programs/html, however EMBOSS html docs are
installed in /usr/share/EMBOSS/doc/html/emboss. The EMBASSY docs are in
/usr/share/EMBOSS/doc/html/embassy.
This seems to be completely different than where the text documents are
installed, /usr/share/EMBOSS/doc/programs/txt. It looks like EMBOSS v3
was installing the html docs in /usr/share/EMBOSS/doc/programs/html, but
that has changed in v4.
So, either the EMBOSS installation needs to be told to install in
/usr/share/EMBOSS/doc/programs/html, or EMBOSS-Explorer needs to be
updated to look in 2 different directories, one for EMBOSS and one for
EMBASSY.
As a third option, EMBOSS-Explorer could run 'tfm -html' to get the html
doc generated on the fly. This is probably overkill though.
2. The new programs introduce new datatypes in the ACD files that
EMBOSS-Explorer doesn't recognize. I get an 'unknown data type' message
display in my browser for these apps.
--
Ryan Golhar - golharam at umdnj.edu
The Informatics Institute of UMDNJ
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