[EMBOSS] protein sequence for individual species

[Derek Gatherer]

For something that has been already curated, try:

http://www.ebi.ac.uk/proteome

Cheers
Derek

At 16:09 06/09/2006, Bryan Gibbon wrote:
>This can be easily done from Entrez
>
>http://www.ncbi.nlm.nih.gov/gquery/gquery.fcgi
>
>Just use the organism qualifier in the search command. For example to fetch
>the sequences for my favorite just enter the command "Zea mays [orgn]". Then
>to download the results change the display to the format you want (genbank,
>fasta etc.) and use the Send to... File menu command to download the
>sequences. For large data sets this can take a while but it is easy.
>
>-----Original Message-----
>From: emboss-bounces at lists.open-bio.org
>[mailto:emboss-bounces at lists.open-bio.org]On Behalf Of Tao Song
>Sent: Wednesday, September 06, 2006 6:28 AM
>To: emboss at lists.open-bio.org; emboss-bounces at lists.open-bio.org
>Subject: [EMBOSS] protein sequence for individual species
>
>
>Hi,
>
>     Is there a place I can download protein sequence file for individual
>species
>(such as human, yeast, etc)? or is there a program can parse the big
>sequence file
>into small ones for individual species?
>
>      Sorry for so many questin. I am new to bioinformatics.
>
>      Thanks so much for you guys' help!
>
>      Regards,
>
>      Tao
>
>_______________________________________________
>EMBOSS mailing list
>EMBOSS at lists.open-bio.org
>http://lists.open-bio.org/mailman/listinfo/emboss
>
>_______________________________________________
>EMBOSS mailing list
>EMBOSS at lists.open-bio.org
>http://lists.open-bio.org/mailman/listinfo/emboss