[EMBOSS] dbifasta
ajb at ebi.ac.uk
ajb at ebi.ac.uk
Mon Oct 30 21:30:03 UTC 2006
Hi,
If the filename is mouse_ensembl_cdna then that's the filename you
should use at the
Wildcard database filename [*.dat]:
prompt. From your email you were using "cdna" instead. As a wildcard
can be specified then perhaps you intended typing "*cdna" which would
have picked up the filename mouse_ensembl_cdna
HTH
Alan
EBI
> Hello,
> while trying to index my database (its mouse_ensembl_cdna and so is the
> name) I always get the following error message:
>
> $ dbifasta
> Database indexing for fasta file databases
> Database name: cdna
> simple : >ID
> idacc : >ID ACC
> gcgid : >db:ID
> gcgidacc : >db:ID ACC
> dbid : >db ID
> ncbi : | formats
> ID line format [idacc]: simple
> Database directory [.]: /data/cdna
> Wildcard database filename [*.dat]: cdna
> Release number [0.0]:
> Index date [00/00/00]:
> General log output file [outfile.dbifasta]: outfile.cdnafasta
>
> EMBOSS An error in dbifasta.c at line 210:
> No files selected
>
>
> For the case it´s relevant - I am using cygwin.
>
> Thank you, Johannes
>
>
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