[EMBOSS] Transeq and very large sequences
Peter Rice
pmr at ebi.ac.uk
Mon Nov 27 15:15:25 UTC 2006
michael watson (IAH-C) wrote:
> I want to translate very large (eukrayotic chromosomes!) DNA sequences
> in all 6 frames. Transeq takes about a day per large chromosome,
> running on a linux machine with 3Gb of RAM.
>
> Any suggestions on alternatives or how I could speed it up?
You want just a 6-frame translation of an entire chromosome?
I will look into why it takes so long. We have made some changes to string size
extension that may already help this for the next release.
regards,
Peter
More information about the EMBOSS
mailing list