[EMBOSS] Transeq and very large sequences
pmr at ebi.ac.uk
Mon Nov 27 15:15:25 UTC 2006
michael watson (IAH-C) wrote:
> I want to translate very large (eukrayotic chromosomes!) DNA sequences
> in all 6 frames. Transeq takes about a day per large chromosome,
> running on a linux machine with 3Gb of RAM.
> Any suggestions on alternatives or how I could speed it up?
You want just a 6-frame translation of an entire chromosome?
I will look into why it takes so long. We have made some changes to string size
extension that may already help this for the next release.
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