[EMBOSS] Transeq and very large sequences

[michael watson (IAH-C)]

Hi

I want to translate very large (eukrayotic chromosomes!) DNA sequences
in all 6 frames.  Transeq takes about a day per large chromosome,
running on a linux machine with 3Gb of RAM. 

Any suggestions on alternatives or how I could speed it up?

Thanks
Mick

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