[EMBOSS] tranalign errors

pmr at ebi.ac.uk pmr at ebi.ac.uk
Sun Nov 12 17:11:00 UTC 2006

> Hello - I'm trying to use tranalign to align DNA sequences but it
> keeps throwing errors.  I tested it on the example input files from
> the documentation web pages and those work fine.
> Error: Guide protein sequence SS1G01814 not found in nucleic sequence
> SS1G01814
> <snip>
> it throws the same error for every pair of proteins in the file
> here are the sequence names in the files.  I can supply the full
> files if anyone thinks they can help.

Yes, please send the full files to emboss-bug at emboss.open-bio.org

The message is not an ID mismatch - it says the protein sequence did not
match the DNA sequence.


Peter Rice

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