[EMBOSS] Does emboss have a handy way for mutate a protein sequence
Guy Bottu
gbottu at ben.vub.ac.be
Tue Mar 7 15:38:08 UTC 2006
Your solution works, as does the one proposed by David Bauer. Both are
however rather tedious. It goes much easier with an interactive sequence
editor. There is MSE, not a standard EMBOSS program but distributed as
Embassadir. It runs in a VT100 terminal ; it is a little bit
intimidating for the novice user, but you can with some practice learn to
use it. At the BEN site we have besides MSE also installed SeaView, a
graphical mode editor (has versions for Windows, Macintosh and X-Window).
These editors are of course only usable if you work locally in your own
computer or in a terminal session in a remote computer. It will not work
if you are using a Web interface for EMBOSS ... although some Web
interfaces might have an applet mode editor that allows to save the
modified sequence back on the server (is there one in Jemboss ?).
Hope this helps,
Guy Bottu,
Belgian EMBnet Node
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